SRX4017891
GSM3123435: MCF10DCIS-TetTCF7 TCF7-HA input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
MCF 10A
Primary Tissue
Breast
Tissue Diagnosis
Fibrocystic Disease

Attributes by original data submitter

Sample

source_name
input for TCF7-HA ChIPseq of MCF10DCIS cells overexpressing TCF7
treatment
Dox
expression vector
TCF7
subtype
MCF10DCIS-TetTCF7
antibody
input
cell type
MCF10DCIS cells

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
RNeasy Mini Kit for RNA extraction, phenol-chloroform extraction for ChIP DNA Kapa mRNA Hyper Pepe Kit, Rubicon ThruPLEX DNA-seq Kit

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
64081461
Reads aligned (%)
93.7
Duplicates removed (%)
30.5
Number of peaks
2683 (qval < 1E-05)

hg19

Number of total reads
64081461
Reads aligned (%)
93.1
Duplicates removed (%)
31.7
Number of peaks
2119 (qval < 1E-05)

Base call quality data from DBCLS SRA