Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TP63

Cell type

Cell type Class
Breast
Cell type
Breast organoids
NA
NA

Attributes by original data submitter

Sample

source_name
p63 ChIPseq of breast organoids from BRCA1 mutation carrier
subtype
BRCA1-mut
antibody
p63
cell type
breast organoids

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
RNeasy Mini Kit for RNA extraction, phenol-chloroform extraction for ChIP DNA Kapa mRNA Hyper Pepe Kit, Rubicon ThruPLEX DNA-seq Kit

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
43920991
Reads aligned (%)
68.9
Duplicates removed (%)
24.1
Number of peaks
1310 (qval < 1E-05)

hg38

Number of total reads
43920991
Reads aligned (%)
72.0
Duplicates removed (%)
21.7
Number of peaks
1811 (qval < 1E-05)

Base call quality data from DBCLS SRA