Antigen

Antigen Class

TFs and others

Antigen

TP63

Cell type

Cell type Class

Breast

Cell type

Breast organoids

NA

NA

Sample

source_name

p63 ChIPseq of breast organoids from BRCA1 mutation carrier

subtype

BRCA1-mut

antibody

p63

cell type

breast organoids

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

RNeasy Mini Kit for RNA extraction, phenol-chloroform extraction for ChIP DNA Kapa mRNA Hyper Pepe Kit, Rubicon ThruPLEX DNA-seq Kit

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

67477365

Reads aligned (%)

86.9

Duplicates removed (%)

22.4

Number of peaks

2313 (qval < 1E-05)

hg19

Number of total reads

67477365

Reads aligned (%)

85.6

Duplicates removed (%)

24.7

Number of peaks

1586 (qval < 1E-05)