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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: TP63
wikigenes
PDBj
CellType: Breast organoids
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX4017882
GSM3123426: N293 B1 p63; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
TP63
Cell type
Cell type Class
Breast
Cell type
Breast organoids
NA
NA
Attributes by original data submitter
Sample
source_name
p63 ChIPseq of breast organoids from BRCA1 mutation carrier
subtype
BRCA1-mut
antibody
p63
cell type
breast organoids
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
RNeasy Mini Kit for RNA extraction, phenol-chloroform extraction for ChIP DNA Kapa mRNA Hyper Pepe Kit, Rubicon ThruPLEX DNA-seq Kit
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
67477365
Reads aligned (%)
64.5
Duplicates removed (%)
24.7
Number of peaks
1586 (qval < 1E-05)
hg38
Number of total reads
67477365
Reads aligned (%)
67.4
Duplicates removed (%)
22.4
Number of peaks
2313 (qval < 1E-05)
Base call quality data from
DBCLS SRA