Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

source_name
liver
cell line
N/A
cell type
liver biopsy
tissue
liver
hbv genotype
D
disease stage
Under therapy (Tenofovir), HBeAg+
ChIP
H3K4me3-ChIP
chip antibody
rabbit polyclonal, abcam ab8580

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
3592323
Reads aligned (%)
98.0
Duplicates removed (%)
2.9
Number of peaks
399 (qval < 1E-05)

hg19

Number of total reads
3592323
Reads aligned (%)
96.9
Duplicates removed (%)
3.6
Number of peaks
400 (qval < 1E-05)

Base call quality data from DBCLS SRA