Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RAD21

Cell type

Cell type Class
Blood
Cell type
THP-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
THP-1 monocyte AML cell line
cell type
THP-1 monocyte AML cell line
treatment
Pam3csk4 treated (7h) + Flavopiridol (3h)
treatment time
07h
donor or replicate
rep1
electroporated mrna
IAV NS1
sirna
siNIPBL
chip antibody
RAD21, Genetex: GTX106012

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
27332568
Reads aligned (%)
67.2
Duplicates removed (%)
22.7
Number of peaks
21718 (qval < 1E-05)

hg38

Number of total reads
27332568
Reads aligned (%)
69.6
Duplicates removed (%)
21.0
Number of peaks
21968 (qval < 1E-05)

Base call quality data from DBCLS SRA