Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Prostate

Cell type

PC-3

Primary Tissue

Prostate

Tissue Diagnosis

Adenocarcinoma

Sample

source_name

bone mets prostate adenocarcinoma

cell line

PC3

chip antibody

none

growth protocol

PC3 cells were maintained in F12K media with 10% FBS and 100 U/ml Penicillin/Streptomycin

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

ChIP DNA was isolated as described in Hollenhorst et. al., Genes and Development, 2011 Sequencing libraries were created as described in Plotnik et.al. Nucleic Acids Research. 2014.

Sequencing Platform

instrument_model

NextSeq 500

hg38

Number of total reads

44554742

Reads aligned (%)

96.9

Duplicates removed (%)

13.5

Number of peaks

1173 (qval < 1E-05)

hg19

Number of total reads

44554742

Reads aligned (%)

96.3

Duplicates removed (%)

15.0

Number of peaks

1028 (qval < 1E-05)