SRX396750
GSM1295566: ChIP-seq P13-WTMECs-Input; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
Mammary epithelial cells
NA
NA

Attributes by original data submitter

Sample

source_name
MECs (mammary epithelial cells), p13, input
strain/background
129SV::FVB/N::C57BL/6
genotype/variation
wild type
tissue
MECs (mammary epithelial cells)
developmental stage
day 13 of pregnancy
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
The ChIP DNA fragments were blunt-ended and ligated to the Illumina Indexed DNA adaptors and sequenced using the Illumina HiSeq 2000.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
10281585
Reads aligned (%)
70.9
Duplicates removed (%)
4.2
Number of peaks
88 (qval < 1E-05)

mm9

Number of total reads
10281585
Reads aligned (%)
70.8
Duplicates removed (%)
4.2
Number of peaks
85 (qval < 1E-05)

Base call quality data from DBCLS SRA