SRX396747
GSM1295563: ChIP-seq P13-WT-Input; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
Mammary glands
NA
NA

Attributes by original data submitter

Sample

source_name
Mammary gland tissues, p13, input
strain/background
129SV::FVB/N::C57BL/6
genotype/variation
wild type
tissue
mammary gland
developmental stage
day 13 of pregnancy
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
The ChIP DNA fragments were blunt-ended and ligated to the Illumina Indexed DNA adaptors and sequenced using the Illumina HiSeq 2000.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
11213279
Reads aligned (%)
80.1
Duplicates removed (%)
7.3
Number of peaks
123 (qval < 1E-05)

mm9

Number of total reads
11213279
Reads aligned (%)
80.0
Duplicates removed (%)
7.3
Number of peaks
109 (qval < 1E-05)

Base call quality data from DBCLS SRA