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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: Mammary glands
ATCC
MeSH
RIKEN BRC
SRX396745
GSM1295561: ChIP-seq L1-WT-Input-rep2; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Breast
Cell type
Mammary glands
NA
NA
Attributes by original data submitter
Sample
source_name
Mammary gland tissues, L1, input
strain/background
129SV::FVB/N::C57BL/6
genotype/variation
wild type
tissue
mammary gland
developmental stage
at parturition
chip antibody
none
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
The ChIP DNA fragments were blunt-ended and ligated to the Illumina Indexed DNA adaptors and sequenced using the Illumina HiSeq 2000.
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
11815998
Reads aligned (%)
93.1
Duplicates removed (%)
4.8
Number of peaks
108 (qval < 1E-05)
mm9
Number of total reads
11815998
Reads aligned (%)
93.1
Duplicates removed (%)
4.8
Number of peaks
105 (qval < 1E-05)
Base call quality data from
DBCLS SRA