Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
T98G
Primary Tissue
Brain
Tissue Diagnosis
Glioblastoma

Attributes by original data submitter

Sample

source_name
T98G
cell line
T98G
cell type
Glioblastoma multiforme cell line
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Antibodies used were H3K4me3 (EMD Millipore, 07-473) and H3K27me3 (Millipore 07-449). Libraries were prepared according to the New England Biolabs NEBNext library prep kit (E6240L). Ampure XP beads (A63881) were used for size-selection and clean-up steps.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
14658720
Reads aligned (%)
94.2
Duplicates removed (%)
29.9
Number of peaks
356 (qval < 1E-05)

hg19

Number of total reads
14658720
Reads aligned (%)
92.8
Duplicates removed (%)
30.4
Number of peaks
261 (qval < 1E-05)

Base call quality data from DBCLS SRA