Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
RAW 264.7
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
RAW_input
cell line
RAW267.4
cell type
Murine monocytes/macrophages-like
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Libraries were prepared according to Illumina's instructions accompanying the Illumina TruSeq Nano DNA Library Prep Kit.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
61282155
Reads aligned (%)
97.8
Duplicates removed (%)
12.8
Number of peaks
524 (qval < 1E-05)

mm9

Number of total reads
61282155
Reads aligned (%)
97.5
Duplicates removed (%)
12.7
Number of peaks
613 (qval < 1E-05)

Base call quality data from DBCLS SRA