SRX3934089
GSM3096623: JURKAT INTS13 PMA; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
INTS13

Cell type

Cell type Class
Blood
Cell type
Jurkat
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic

Attributes by original data submitter

Sample

source_name
JURKAT cell line
chip antibody
INTS13, Bethyl A303-575A
cell line
Jurkat
treatment
PMA (16h)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
NEBNext ChIP-Seq ULTRAII DNA Sample Prep Kit (New England Biolabs, inc.)

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
36903109
Reads aligned (%)
91.9
Duplicates removed (%)
11.3
Number of peaks
10876 (qval < 1E-05)

hg19

Number of total reads
36903109
Reads aligned (%)
91.1
Duplicates removed (%)
13.7
Number of peaks
10536 (qval < 1E-05)

Base call quality data from DBCLS SRA