Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
REST

Cell type

Cell type Class
Blood
Cell type
Jurkat
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic

Attributes by original data submitter

Sample

source_name
Jurkat-NRSF
cell type
Jurkat
chip antibody
mouse monoclonal NRSF
chip antibody info
custom generated (Johnson et al. 2007, PMID: 17540862)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were fixed using 1% formaldehyde (NRSF samples) or 1% formaldehyde at 37C (p300 samples). Libraries were generated following Illumina's DNA Sample Prep Kit protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
23977854
Reads aligned (%)
78.4
Duplicates removed (%)
7.7
Number of peaks
3404 (qval < 1E-05)

hg38

Number of total reads
23977854
Reads aligned (%)
80.3
Duplicates removed (%)
6.2
Number of peaks
3266 (qval < 1E-05)

Base call quality data from DBCLS SRA