Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Others
Cell type
T3M-1 Cl-10
Primary Tissue
Oral Cavity
Tissue Diagnosis
Carcinoma Squamous Cell

Attributes by original data submitter

Sample

source_name
Oral cancer cell line
cell
T3M-1 Cl-10
genotype
wild type
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
T3M-1 Cl-10 cells were infected with a mock retrovirus or virus generated from pMXS-ires-EGFP expressing FLAG-epitope–tagged ELF4 or ELF4(L211M). ChIP was conducted with anti-FLAG M2 antibody (Sigma-Aldrich). The precipitated DNA fragments were subjected to massively parallel sequencing with Genome Analyzer IIx (Illumina) for 51 bases from both ends of the fragments. ChIP-seq libraries were prepared using Illumina NEBNext ChIP-Seq Library Prep Reagent Set following the manufacturer's protocols.

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
24166324
Reads aligned (%)
53.9
Duplicates removed (%)
35.5
Number of peaks
278 (qval < 1E-05)

hg19

Number of total reads
24166324
Reads aligned (%)
53.6
Duplicates removed (%)
35.8
Number of peaks
260 (qval < 1E-05)

Base call quality data from DBCLS SRA