Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOXA1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF-7_vehicle_rep3_FOXA1
cell line
MCF7
cell type
breast cancer cell line
chip antibody
anti-FOXA1 (ab23738) Abcam
treatment
hormone-deprived cells treated with vehicle

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIPseq, Schmidt et al, 2009. PMID: 19275946 phenol chloroform isoamyl DNA extraction ChIPseq, Schmidt et al, 2009. PMID: 19275939

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg19

Number of total reads
48027341
Reads aligned (%)
76.7
Duplicates removed (%)
22.3
Number of peaks
41819 (qval < 1E-05)

hg38

Number of total reads
48027341
Reads aligned (%)
78.2
Duplicates removed (%)
21.3
Number of peaks
41918 (qval < 1E-05)

Base call quality data from DBCLS SRA