Antigen

Antigen Class

TFs and others

Antigen

DDX5

Cell type

Cell type Class

Breast

Cell type

BT-549

Primary Tissue

Breast

Tissue Diagnosis

Adenocarcinoma Ductal

Sample

source_name

BT549 cells

cell line

BT549

cell type

ERalpha-negtive breast cancer cells

chip antibody

DDX5 (ab21696, Abcam)

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Lysates were clarified from sonicated nuclei, IgG, Fra-1 and DDX5 complexes were isolated with antibody. ChIP-seq libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg19

Number of total reads

42792776

Reads aligned (%)

84.0

Duplicates removed (%)

13.8

Number of peaks

1577 (qval < 1E-05)

hg38

Number of total reads

42792776

Reads aligned (%)

86.6

Duplicates removed (%)

12.0

Number of peaks

1534 (qval < 1E-05)