Curated Sample Data


Genome
mm9
Antigen Class
Input control
Antigen
Input control
Cell type Class
Blood
Cell type
Hematopoietic Stem Cells

Cell type information


MeSH Description
Progenitor cells from which all blood cells derived. They are found primarily in the bone marrow and also in small numbers in the peripheral blood.

Attributes by Original Data Submitter


source_name
Mouse HPCs
tissue
Hematopoietic System
antibody
IgG

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Fix 1% paraformaldehyde, nuclear purification with 0.5% NP40, DNA solubilization and sonication in 1% SDS followed by Co-IP with antibody of interest Illumina Truseq LT

Platform Information


instrument_model
Illumina HiSeq 2500

External Database Query

Logs in read processing pipeline


Number of total reads
23478531
Reads aligned (%)
96.6
Duplicates removed (%)
18.1
Number of peaks
1023 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA