SRX3883437
GSM3080183: TOFU-4 ChIP-seq; Caenorhabditis elegans; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Adult
Cell type
Young adult
NA
NA

Attributes by original data submitter

Sample

source_name
Young adults
tissue
whole animal extract
developmental stage
Young adults

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Animals were frozen in liquid nitogen and crushed in metallic grinder. Animal extracts were lysed in FA Buffer and sonicated in BIORUPTOR at 4C. NEB-NEXT Ultra II DNA Prep

Sequencing Platform

instrument_model
Illumina HiSeq 1500

Where can I get the processing logs?

Read processing pipeline log

ce11

Number of total reads
31613391
Reads aligned (%)
41.0
Duplicates removed (%)
16.6
Number of peaks
824 (qval < 1E-05)

ce10

Number of total reads
31613391
Reads aligned (%)
41.0
Duplicates removed (%)
16.6
Number of peaks
818 (qval < 1E-05)

Base call quality data from DBCLS SRA