Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
VDR

Cell type

Cell type Class
Blood
Cell type
THP-1
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
THP-1 cells polarized towards M1-macrophages using LPS
cell_line
THP-1
treatment
1α,25(OH)2D3
antibody
VDR

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
see PMID: 21846776 Standard protocol as suggested by the manufacturer for ChIP-seq libraries as utilized at the EMBL Gene Core in Heidelberg, Germany.

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
13887738
Reads aligned (%)
51.6
Duplicates removed (%)
38.0
Number of peaks
636 (qval < 1E-05)

hg38

Number of total reads
13887738
Reads aligned (%)
53.6
Duplicates removed (%)
36.4
Number of peaks
626 (qval < 1E-05)

Base call quality data from DBCLS SRA