Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

source_name
Liver
strain
C57BL/6
tissue
Liver
developmental stage
Adult
gender
male
genotype/variation
WT
chip antibody
none (input)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Liver was extracted and flash frozen in liquid nitrogen. The library construction was performed by Active Motif according to their protocol.

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
55159154
Reads aligned (%)
98.7
Duplicates removed (%)
22.6
Number of peaks
1014 (qval < 1E-05)

mm9

Number of total reads
55159154
Reads aligned (%)
98.5
Duplicates removed (%)
22.7
Number of peaks
1036 (qval < 1E-05)

Base call quality data from DBCLS SRA