Curated Sample Data


Genome
dm3
Antigen Class
Input control
Antigen
Input control
Cell type Class
Cell line
Cell type
S2

Cell type information


Source
Oregon R
Developmental Stage
late embryonic stage

Attributes by Original Data Submitter


source_name
S2 cells
cell type
Late embryonic derived S2 cells
chip antibody
anti-IgG control antibody

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Standard chromatin extraction procedures were utilized for ChIP analysis using anti-Beaf32 or anti-IgG control antibodies. Antibodies were generated in the lab (Affinity purified, rabbit antibodies raised against 18AA-long C-terminal peptides. ChIP samples were prepared for sequencing using standard Illumina protocols of TruSeq ChIP sample prep kits from 1.2 ng of starting precipitated DNA to generate sequencing libraries

Platform Information


instrument_model
Illumina Genome Analyzer II

External Database Query

Logs in read processing pipeline


Number of total reads
5879337
Reads aligned (%)
29.0
Duplicates removed (%)
71.1
Number of peaks
1382 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA