Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
lincRNA-p21+/+ murine MEF WCE input without Doxorubicin.
strain background
hybrid 129/B6
genotype/variation
wild type: lincRNA-p21+/+
cell type
mouse embryonic fibroblast (MEF)
treatment
Mock
chip antibody
none (input)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and bound DNA fragments were isolated with antibody. Genomic DNA libraries were prepared for sequencing using standard Illumina protocols.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
13676507
Reads aligned (%)
98.8
Duplicates removed (%)
11.0
Number of peaks
361 (qval < 1E-05)

mm9

Number of total reads
13676507
Reads aligned (%)
98.5
Duplicates removed (%)
11.1
Number of peaks
372 (qval < 1E-05)

Base call quality data from DBCLS SRA