Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TAL1

Cell type

Cell type Class
Blood
Cell type
CD34+
NA
NA

Attributes by original data submitter

Sample

source_name
Human primary adult proerythroblasts (ProEs)
cell type
CD34+ HSPC-derived proerythroblasts
tissue
bone marrow
developmental stage
adult
chip antibody
TAL1 - Santa Cruz Biotechnology sc-12984

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
For ChIP-seq analysis using the Illumin HiSeq2000, 10-20 ng of ChIP DNA was processed for library generation using the ChIP-seq Sample Preparation Kit (Illumina) following the manufacturer’s protocol. Raw ChIP-seq data were processed using the Illumina software pipeline. Only ChIP-seq reads that aligned to exactly one location in the reference human genome (UCSC, hg19) were retained for downstream data analysis.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
129960043
Reads aligned (%)
37.6
Duplicates removed (%)
49.4
Number of peaks
23511 (qval < 1E-05)

hg38

Number of total reads
129960043
Reads aligned (%)
38.8
Duplicates removed (%)
48.2
Number of peaks
23818 (qval < 1E-05)

Base call quality data from DBCLS SRA