Curated Sample Data


Genome
dm3
Antigen Class
Input control
Antigen
Input control
Cell type Class
Cell line
Cell type
S2

Cell type information


Source
Oregon R
Developmental Stage
late embryonic stage

Attributes by Original Data Submitter


source_name
S2 cells
genotype
mutant Beaf
cell line
S2
chip antibody
input

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
S2 cells were treated with formaldehyde (0.8% final, 15 min) followed by standard sonication and extraction procedures of chromatin for ChIP analysis ChIP samples were prepared for sequencing using standard Illumina protocols of TruSeq ChIP sample prep kits from 100 ng of starting precipitated DNA to generate sequencing libraries

Platform Information


instrument_model
Illumina HiSeq 2000

External Database Query

Logs in read processing pipeline


Number of total reads
27474174
Reads aligned (%)
98.0
Duplicates removed (%)
11.1
Number of peaks
3468 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA