Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Cp190

Cell type

Cell type Class
Cell line
Cell type
S2
Source
Oregon R
Developmental Stage
late embryonic stage

Attributes by original data submitter

Sample

source_name
S2 cells
genotype
wild type Beaf
cell line
S2
chip antibody
CP190

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
S2 cells were treated with formaldehyde (0.8% final, 15 min) followed by standard sonication and extraction procedures of chromatin for ChIP analysis ChIP samples were prepared for sequencing using standard Illumina protocols of TruSeq ChIP sample prep kits from 100 ng of starting precipitated DNA to generate sequencing libraries

Sequencing Platform

instrument_model
Illumina HiSeq 2000

dm3

Number of total reads
21042813
Reads aligned (%)
89.9
Duplicates removed (%)
32.3
Number of peaks
4827 (qval < 1E-05)

dm6

Number of total reads
21042813
Reads aligned (%)
89.7
Duplicates removed (%)
35.4
Number of peaks
5580 (qval < 1E-05)

Base call quality data from DBCLS SRA