Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
Treg
NA
NA

Attributes by original data submitter

Sample

source_name
Effector memory TREG cells
disease state
control
individual
C14
tissue
Peripheral Blood
cell type
Effector memory TREG cells
chip antibody
None

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Libraries were prepared using ThruPLEX® DNA-seq Kit (Rubicon Genomics) according to the protocol from the vendor. Qubit, bioanalyzer and KAPA qPCR were done before pooling for sequencing on HiSeq 2500 platform.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
28432044
Reads aligned (%)
98.7
Duplicates removed (%)
6.9
Number of peaks
1026 (qval < 1E-05)

hg19

Number of total reads
28432044
Reads aligned (%)
97.7
Duplicates removed (%)
8.5
Number of peaks
1061 (qval < 1E-05)

Base call quality data from DBCLS SRA