Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
XBP1

Cell type

Cell type Class
Breast
Cell type
Hs 578T
Primary Tissue
Breast
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
breast cancer cells
cell type
triple negative breast cancer cells
chip antibody
XBP1 (Biolegend, 619502)
cell line
HS578T

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was performed as previously described by Chen et al. (Cell 2008). The ChIP-seq library was prepared using ChIP-Seq DNA Sample Prep Kit (Illumina) according to the manufacturer’s instructions.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
219869126
Reads aligned (%)
42.9
Duplicates removed (%)
45.8
Number of peaks
3445 (qval < 1E-05)

hg38

Number of total reads
219869126
Reads aligned (%)
44.6
Duplicates removed (%)
44.1
Number of peaks
4263 (qval < 1E-05)

Base call quality data from DBCLS SRA