Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Liver

Cell type

Liver

MeSH Description

A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Sample

source_name

HCC liver

sample id

674T

tissue

liver

disease state

HCC

chip antibody

none

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Mnase digested nucleosomes libraries were constructed according to illumina's instructions

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

43575661

Reads aligned (%)

98.9

Duplicates removed (%)

6.0

Number of peaks

667 (qval < 1E-05)

hg19

Number of total reads

43575661

Reads aligned (%)

97.9

Duplicates removed (%)

6.6

Number of peaks

455 (qval < 1E-05)