Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Liver
Cell type
Liver Cirrhosis
MeSH Description
Liver disease in which the normal microcirculation, the gross vascular anatomy, and the hepatic architecture have been variably destroyed and altered with fibrous septa surrounding regenerated or regenerating parenchymal nodules.

Attributes by original data submitter

Sample

source_name
cirrhotic liver
sample id
661N
tissue
liver
disease state
cirrhosis
chip antibody
ab8580, abcam

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Mnase digested nucleosomes libraries were constructed according to illumina's instructions

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
15776348
Reads aligned (%)
98.8
Duplicates removed (%)
1.5
Number of peaks
4227 (qval < 1E-05)

hg19

Number of total reads
15776348
Reads aligned (%)
97.9
Duplicates removed (%)
2.3
Number of peaks
4119 (qval < 1E-05)

Base call quality data from DBCLS SRA