Antigen

Antigen Class

Histone

Antigen

H3K4me3

Cell type

Cell type Class

Liver

Cell type

Liver

MeSH Description

A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Sample

source_name

normal liver

sample id

756

tissue

liver

disease state

normal

chip antibody

ab8580, abcam

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Mnase digested nucleosomes libraries were constructed according to illumina's instructions

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

15827106

Reads aligned (%)

98.7

Duplicates removed (%)

1.2

Number of peaks

1457 (qval < 1E-05)

hg19

Number of total reads

15827106

Reads aligned (%)

97.7

Duplicates removed (%)

1.9

Number of peaks

1351 (qval < 1E-05)