Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CSE1L

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
B2-1-BirA-CSE1L-Avi
parental cell line
HEK-293 cell line
cell line
B2-1-BirA-CSE1L-Avi
cell type
somatic cell line
genotype/variation
B2-1-BirA-CSE1L-Avi
tissue
embryonic kidney
developmental stage
fetus

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Genomic DNA was isolated by conventional phenol extraction and proteinase K treatment. For sperm samples, 40 mM DTT were added during cell lysis. According to standard protocols provided by Illumina Kits.

Sequencing Platform

instrument_model
HiSeq X Ten

hg19

Number of total reads
25427479
Reads aligned (%)
13.1
Duplicates removed (%)
90.7
Number of peaks
111 (qval < 1E-05)

hg38

Number of total reads
25427479
Reads aligned (%)
14.3
Duplicates removed (%)
89.9
Number of peaks
156 (qval < 1E-05)

Base call quality data from DBCLS SRA