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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: GC-1 spg
ATCC
MeSH
RIKEN BRC
SRX3816070
GSM3053295: input, GC-1 WT; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Gonad
Cell type
GC-1 spg
Tissue
Testis
Cell Type
Transformed With Psv3-Neo
Disease
Spermatogonia
Attributes by original data submitter
Sample
source_name
Spg GC-1 cell line
strain
BALB/c
tissue
Spg GC-1 cell line
antibody
N/A
genotype
SPG GC-1 cells expressing GFP-PRDM9-WT
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was performed on fixed tissue
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
94329232
Reads aligned (%)
76.7
Duplicates removed (%)
11.7
Number of peaks
321 (qval < 1E-05)
mm9
Number of total reads
94329232
Reads aligned (%)
76.6
Duplicates removed (%)
11.7
Number of peaks
393 (qval < 1E-05)
Base call quality data from
DBCLS SRA