Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Gonad
Cell type
GC-1 spg
Tissue
Testis
Cell Type
Transformed With Psv3-Neo
Disease
Spermatogonia

Attributes by original data submitter

Sample

source_name
Spg GC-1 cell line
strain
BALB/c
tissue
Spg GC-1 cell line
antibody
N/A
genotype
SPG GC-1 cells expressing GFP-PRDM9-WT

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was performed on fixed tissue

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
94329232
Reads aligned (%)
76.7
Duplicates removed (%)
11.7
Number of peaks
321 (qval < 1E-05)

mm9

Number of total reads
94329232
Reads aligned (%)
76.6
Duplicates removed (%)
11.7
Number of peaks
393 (qval < 1E-05)

Base call quality data from DBCLS SRA