Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
CD8+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
Effector Input Kaech
cell type
CD8+ T cells
cell subset
Effector
assay
Input
lab
Kaech
run
Sample_G_29_2c__001
librarylayout
SINGLE
replicate
4
chip antibody
none (Input)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
39940976
Reads aligned (%)
98.8
Duplicates removed (%)
15.3
Number of peaks
375 (qval < 1E-05)

mm9

Number of total reads
39940976
Reads aligned (%)
98.5
Duplicates removed (%)
15.2
Number of peaks
387 (qval < 1E-05)

Base call quality data from DBCLS SRA