SRX3785596
GSM3039568: mouse control; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Spleen
Cell type
Spleen
MeSH Description
An encapsulated lymphatic organ through which venous blood filters.

Attributes by original data submitter

Sample

source_name
mouse genomic DNA
cell type
spleen
age
3 months
strain
C57BL/6J

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
phenol-chlorophorm Illumina Nextera DNA

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
97828622
Reads aligned (%)
84.8
Duplicates removed (%)
46.1
Number of peaks
436 (qval < 1E-05)

mm9

Number of total reads
97828622
Reads aligned (%)
84.5
Duplicates removed (%)
46.0
Number of peaks
512 (qval < 1E-05)

Base call quality data from DBCLS SRA