SRX3772395
GSM3032902: ChIP-Seq WT STAG2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
OCI-AML3
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
OCI-AML3
cell line
OCI-AML3
cell type
Early Monocycte/Macrophages
stag2 status
STAG2-WT
chip_antibody
CST STAG2 (D25A4) XP® Rabbit mAb #5882 (Lot 1)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and target-DNA complexes were isolated with antibody. Diagenode Microplex V1

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
36804041
Reads aligned (%)
94.8
Duplicates removed (%)
20.5
Number of peaks
39759 (qval < 1E-05)

hg19

Number of total reads
36804041
Reads aligned (%)
94.3
Duplicates removed (%)
22.1
Number of peaks
39388 (qval < 1E-05)

Base call quality data from DBCLS SRA