SRX3772393
GSM3032900: ChIP-Seq WT CTCF; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
OCI-AML3
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Myelogenous

Attributes by original data submitter

Sample

source_name
OCI-AML3
cell line
OCI-AML3
cell type
Early Monocycte/Macrophages
stag2 status
STAG2-WT
chip_antibody
Diagenode CTCF polyclonal antibody - Classic (Lot A2359-00234P)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and target-DNA complexes were isolated with antibody. Diagenode Microplex V1

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
40142583
Reads aligned (%)
97.9
Duplicates removed (%)
24.6
Number of peaks
74842 (qval < 1E-05)

hg19

Number of total reads
40142583
Reads aligned (%)
97.7
Duplicates removed (%)
25.3
Number of peaks
73547 (qval < 1E-05)

Base call quality data from DBCLS SRA