Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pancreas
Cell type
Pancreatic islets
NA
NA

Attributes by original data submitter

Sample

source_name
pancreatic islets, input
tissue
pancreatic islets
Sex
female
age
37
purity
80
viability
97
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Crosslinked chromatin was prepared and immunoprecipitated as described in Stitzel ML, et al. (Cell Metab, 2010). Libraries were prepared and sequenced using standard Illumina protocols for GAII.

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
5405448
Reads aligned (%)
98.1
Duplicates removed (%)
1.0
Number of peaks
94 (qval < 1E-05)

hg19

Number of total reads
5405448
Reads aligned (%)
97.3
Duplicates removed (%)
2.1
Number of peaks
418 (qval < 1E-05)

Base call quality data from DBCLS SRA