Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Adipocyte
Cell type
LPS141
NA
NA

Attributes by original data submitter

Sample

source_name
LPS141
cell type
liposarcoma cells
chip antibody
H3K4me1 (Abcam, #ab8895)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
48972670
Reads aligned (%)
99.5
Duplicates removed (%)
16.2
Number of peaks
96270 (qval < 1E-05)

hg19

Number of total reads
48972670
Reads aligned (%)
99.3
Duplicates removed (%)
16.4
Number of peaks
95833 (qval < 1E-05)

Base call quality data from DBCLS SRA