Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
iBAd Cell Line
strain
C57BL/6
genotype
IL10Ra-Expressing
stimulus
differentiated
chip antibody
none (input)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Purified nuclei from iBAD cells were lysed and chromatin was sheared using a Bioruptor prior to immunoprecipitation with anti-CEBPB antibodies Libraries were constructed using Kapa's LTP Library Preparation kit according to manufactuer's instruction.

Sequencing Platform

instrument_model
Illumina HiSeq 4000

mm10

Number of total reads
41173178
Reads aligned (%)
94.7
Duplicates removed (%)
16.2
Number of peaks
576 (qval < 1E-05)

mm9

Number of total reads
41173178
Reads aligned (%)
94.5
Duplicates removed (%)
16.2
Number of peaks
585 (qval < 1E-05)

Base call quality data from DBCLS SRA