SRX3729400
GSM3018473: MED1 SenDMSO ChIP-seq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Med1

Cell type

Cell type Class
Blood
Cell type
Hematopoietic progenitors
NA
NA

Attributes by original data submitter

Sample

source_name
MLL-AF9 I-BET sensitive cells
tissue
haematopoietic progenitors
condition
I-BET Sensitive
strain
C57BL/6
chip antibody
anti-Med1/CRSP1/Trap220 (A300-793A, Bethyl Labs)
treatment
DMSO

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysate were isolated from formaldehybe cross-linked cells and sonicated to release the chromatin, then immunoprecipitated with antibody ThruPLEXTM-FD Prep Kit protocol (Rubicon Genomics)

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
12653116
Reads aligned (%)
96.2
Duplicates removed (%)
12.0
Number of peaks
5275 (qval < 1E-05)

mm9

Number of total reads
12653116
Reads aligned (%)
96.0
Duplicates removed (%)
12.2
Number of peaks
5273 (qval < 1E-05)

Base call quality data from DBCLS SRA