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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Brd4
wikigenes
PDBj
CellType: Hematopoietic progenitors
ATCC
MeSH
RIKEN BRC
SRX3729386
GSM3018459: BRD4 ResLSD1i ChIP-seq; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Brd4
Cell type
Cell type Class
Blood
Cell type
Hematopoietic progenitors
NA
NA
Attributes by original data submitter
Sample
source_name
MLL-AF9 I-BET resistant cells
tissue
haematopoietic progenitors
condition
I-BET Resistant
strain
C57BL/6
chip antibody
anti-Brd4 (A301-985A100, Bethyl Labs)
treatment
LSD1i
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysate were isolated from formaldehybe cross-linked cells and sonicated to release the chromatin, then immunoprecipitated with antibody ThruPLEXTM-FD Prep Kit protocol (Rubicon Genomics)
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
12821963
Reads aligned (%)
95.9
Duplicates removed (%)
10.1
Number of peaks
5271 (qval < 1E-05)
mm9
Number of total reads
12821963
Reads aligned (%)
95.7
Duplicates removed (%)
10.2
Number of peaks
5248 (qval < 1E-05)
Base call quality data from
DBCLS SRA