Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
Breast cancer cells
NA
NA

Attributes by original data submitter

Sample

source_name
PDX04
biomaterial_provider
Caldas Lab, CRUK CI
tissue id
STG195-x4
tissue
Breast Cancer patient-derived xenograft (PDX)
chip antibody
ER (sc-543)
parallel chip antibody
CTCF (D31H2)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ThruPlex

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
55059236
Reads aligned (%)
26.1
Duplicates removed (%)
63.4
Number of peaks
34846 (qval < 1E-05)

hg38

Number of total reads
55059236
Reads aligned (%)
27.2
Duplicates removed (%)
62.1
Number of peaks
34966 (qval < 1E-05)

Base call quality data from DBCLS SRA