SRX3722705
GSM3017268: AB580-x1 ChIP-seq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
Breast cancer cells
NA
NA

Attributes by original data submitter

Sample

source_name
PDX03
biomaterial_provider
Caldas Lab, CRUK CI
tissue id
AB580-x1
tissue
Breast Cancer patient-derived xenograft (PDX)
chip antibody
ER (sc-543)
parallel chip antibody
CTCF (D31H2)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ThruPlex

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
28596984
Reads aligned (%)
57.0
Duplicates removed (%)
27.3
Number of peaks
31468 (qval < 1E-05)

hg19

Number of total reads
28596984
Reads aligned (%)
56.6
Duplicates removed (%)
27.9
Number of peaks
31383 (qval < 1E-05)

Base call quality data from DBCLS SRA