SRX3722704
GSM3017267: VHI0244o2-x4 ChIP-seq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
Breast cancer cells
NA
NA

Attributes by original data submitter

Sample

source_name
PDX02
biomaterial_provider
Caldas Lab, CRUK CI
tissue id
VHI0244o2-x4
tissue
Breast Cancer patient-derived xenograft (PDX)
chip antibody
ER (sc-543)
parallel chip antibody
CTCF (D31H2)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ThruPlex

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
924692
Reads aligned (%)
61.8
Duplicates removed (%)
16.1
Number of peaks
13 (qval < 1E-05)

hg38

Number of total reads
924692
Reads aligned (%)
62.3
Duplicates removed (%)
15.6
Number of peaks
11 (qval < 1E-05)

Base call quality data from DBCLS SRA