Curated Sample Data


Genome
hg19
Antigen Class
Unclassified
Antigen
Unclassified
Cell type Class
Digestive tract
Cell type
HuG1-N

Cell type information


Primary Tissue
Stomach
Tissue Diagnosis
Carcinoma

Attributes by Original Data Submitter


source_name
HUG1N_control
cell line
HuG-1
cell type
gastric carcinoma

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were lysed in SDS lysis buffer. Cells were crosslinked at 50% confluency with 1% formaldehyde. Libraries were made using the NEB kit following the instructions of the manufacturer.

Platform Information


instrument_model
Illumina Genome Analyzer II

External Database Query

Logs in read processing pipeline


Number of total reads
22404077
Reads aligned (%)
37.9
Duplicates removed (%)
5.6
Number of peaks
517 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA