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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: GATA6
wikigenes
PDBj
CellType: HuG1-N
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX371983
GSM1255513: HUG1N GATA6; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
GATA6
Cell type
Cell type Class
Digestive tract
Cell type
HuG1-N
Primary Tissue
Stomach
Tissue Diagnosis
Carcinoma
Attributes by original data submitter
Sample
source_name
HUG1N_GATA6_ChIP
cell line
HuG-1
cell type
gastric carcinoma
chip antibody
GATA6
chip antibody vendor
Cell Signaling
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were lysed in SDS lysis buffer. Cells were crosslinked at 50% confluency with 1% formaldehyde. Libraries were made using the NEB kit following the instructions of the manufacturer.
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
24838312
Reads aligned (%)
63.2
Duplicates removed (%)
5.2
Number of peaks
2309 (qval < 1E-05)
hg38
Number of total reads
24838312
Reads aligned (%)
64.3
Duplicates removed (%)
4.2
Number of peaks
2201 (qval < 1E-05)
Base call quality data from
DBCLS SRA