Antigen

Antigen Class

TFs and others

Antigen

GATA6

Cell type

Cell type Class

Digestive tract

Cell type

HuG1-N

Primary Tissue

Stomach

Tissue Diagnosis

Carcinoma

Sample

source_name

HUG1N_GATA6_ChIP

cell line

HuG-1

cell type

gastric carcinoma

chip antibody

GATA6

chip antibody vendor

Cell Signaling

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Cells were lysed in SDS lysis buffer. Cells were crosslinked at 50% confluency with 1% formaldehyde. Libraries were made using the NEB kit following the instructions of the manufacturer.

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

hg19

Number of total reads

24838312

Reads aligned (%)

63.2

Duplicates removed (%)

5.2

Number of peaks

2309 (qval < 1E-05)

hg38

Number of total reads

24838312

Reads aligned (%)

64.3

Duplicates removed (%)

4.2

Number of peaks

2201 (qval < 1E-05)