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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Unclassified
wikigenes
PDBj
CellType: PBMC
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX3718142
GSM3016020: reference (GG), (003, rep 3) [ChIP-Seq]; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Unclassified
Antigen
Unclassified
Cell type
Cell type Class
Blood
Cell type
PBMC
Tissue
blood
Lineage
mesoderm
Description
peripheral blood mononuclear cells
Attributes by original data submitter
Sample
source_name
PBMCs
tissue
PBMCs
cell type
EBV (Epstein Barr Virus)-transformed B lymphocyte cells
genotype
(CC)
gender
female
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Immunoprecipitation was performed using Active Motif #61213 to produce 10ng ChIP DNA TruSeq DNA
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
136867434
Reads aligned (%)
81.2
Duplicates removed (%)
58.3
Number of peaks
2147 (qval < 1E-05)
hg19
Number of total reads
136867434
Reads aligned (%)
80.0
Duplicates removed (%)
59.2
Number of peaks
617 (qval < 1E-05)
Base call quality data from
DBCLS SRA