Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
PBMC
Tissue
blood
Lineage
mesoderm
Description
peripheral blood mononuclear cells

Attributes by original data submitter

Sample

source_name
PBMCs
tissue
PBMCs
cell type
EBV (Epstein Barr Virus)-transformed B lymphocyte cells
genotype
(CC)
gender
female

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Immunoprecipitation was performed using Active Motif #61213 to produce 10ng ChIP DNA TruSeq DNA

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
87009531
Reads aligned (%)
93.6
Duplicates removed (%)
31.3
Number of peaks
3972 (qval < 1E-05)

hg19

Number of total reads
87009531
Reads aligned (%)
88.4
Duplicates removed (%)
31.9
Number of peaks
1379 (qval < 1E-05)

Base call quality data from DBCLS SRA