ChIP-Atlas: SRX3700579

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Unclassified
Antigen: Unclassified

Cell type

Cell type Class: Blood
Cell type: ALL-SIL
Primary Tissue: Blood
Tissue Diagnosis: Leukemia

Attributes by original data submitter

Sample

source_name: ALL-SIL cell line
cell line: ALL-SIL

Sequenced DNA Library

library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP
library_construction_protocol: DNA was purified by phenol/chloroform extraction, assisted by phase lock gel tubes (5Prime).

Sequencing Platform

instrument_model: NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads: 28590025
Reads aligned (%): 85.0
Duplicates removed (%): 8.7
Number of peaks: 2227 (qval < 1E-05)

hg19

Number of total reads: 28590025
Reads aligned (%): 83.4
Duplicates removed (%): 13.2
Number of peaks: 1438 (qval < 1E-05)

Base call quality data from DBCLS SRA