SRX3700578
GSM3004533: H3K4me1 ChIP-seq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
ALL-SIL
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
ALL-SIL cell line
cell line
ALL-SIL

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was purified by phenol/chloroform extraction, assisted by phase lock gel tubes (5Prime).

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
41543910
Reads aligned (%)
96.8
Duplicates removed (%)
6.5
Number of peaks
26385 (qval < 1E-05)

hg19

Number of total reads
41543910
Reads aligned (%)
96.2
Duplicates removed (%)
7.9
Number of peaks
26214 (qval < 1E-05)

Base call quality data from DBCLS SRA